Molecular phylogeny and systematics of the Lilium carniolicum group (Liliaceae) based on nuclear ITS sequences

@article{Reetnik2006MolecularPA,
  title={Molecular phylogeny and systematics of the Lilium carniolicum group (Liliaceae) based on nuclear ITS sequences},
  author={Ivana Re{\vs}etnik and Zlatko Liber and Zlatko {\vS}atovi{\'c} and Petra Cigi{\'c} and Toni Nikoli{\'c}},
  journal={Plant Systematics and Evolution},
  year={2006},
  volume={265},
  pages={45-58}
}
The Lilium carniolicum group consists of several taxonomically dubious taxa endemic to the European flora. Internal transcribed spacer (ITS) sequences of nuclear ribosomal DNA (nrDNA) were used to clarify both the delineation of, and relationships among, taxa in the group as well as to provide insight on the phylogenetic position of the group within the genus. Maximum parsimony, maximum likelihood and Bayesian analyses were in general agreement, with all taxa in the group being very closely… Expand

Figures and Tables from this paper

Molecular phylogeny and divergence times estimates of Lilium section Liriotypus (Liliaceae) based on plastid and nuclear ribosomal ITS DNA sequence data
TLDR
The phylogenetic reconstruction based on combined analysis of plastid and nrDNA ITS sequence data shows that all of the analysed species of section Liriotypus form a well-supported monophyletic clade, however, there are some incongruences between the analysis made byplastid DNA alone and with a combined dataset regarding the positions of L. monadelphum. Expand
Phylogenetic relationships of Gagea Salisb. (Liliaceae) in Italy, inferred from molecular and morphological data matrices
TLDR
Morphological, molecular and combined data support the basal position of G. trinervia (Anthericoides), and the section Gagea forms a well-defined monophyletic clade. Expand
Internal transcribed spacer (ITS) and genetic variations in Lilium native to Korea
Internal transcribed spacers (ITS) of nuclear ribosomal DNA cistrons were studied in wild Lilium species native to Korea and compared with those species in the genus distributed in other countries toExpand
Evaluating phylogenetic relationships in the Lilium family using the ITS marker
TLDR
The research showed that ITS molecular markers are very suitable for phylogenetic studies in the Lilium family. Expand
Molecular evidence does not support the current division of Orthotrichum subgenus Gymnoporus
TLDR
Eight Orthotrichum species of subgenus Gymnoporus were compared using the internally transcribed spacer regions-1 and -2 and the chloroplast trnH-psbA region and revealed a close relationship between O. striatum and O. affine, a typical species of section Affinia. Expand
A new species in the genus Nomocharis Franchet (Liliaceae): evidence that brings the genus Nomocharis into Lilium
TLDR
The phylogenetic and pair-wise distance analyses of nrITS and chloroplast psbA-trnH support recognition of the yellow-flowered morphotype lacking nectary processes as a new, separate species of Nomocharis, and support the monophyly of Lilium–Nomocharis and mutual paraphyly of the two genera. Expand
Molecular phylogeny and genetic variation in the genus Lilium native to China based on the internal transcribed spacer sequences of nuclear ribosomal DNA
TLDR
Based on molecular phylogenetic analysis and fluorescence in situ hybridization, it is reported that L. henryi and L.rosthornii are closely related, and it is suggested that the subsection (subsect.) 5c Comber should be classified into the true subsect. Expand
Genetic relationships among NE Turkish Lilium L. (Liliaceae) species based on a random amplified polymorphic DNA analysis
TLDR
Analysis of molecular variance (AMOVA) indicated that nearly half of the total molecular variance is found within the individual populations and that the molecular variance among species is as high as the variance within theindividual species, indicating that genetic differentiation of the species is rather weak. Expand
Karyotype evolution and speciation of European lilies from Lilium sect. Liriotypus.
TLDR
Clear interspecific differentiation was revealed among karyotypes of these taxa using fluorochrome (chromomycin and DAPI) bandings, fluorescent in situ hybridization and silver staining and it is hypothesized that the type species of Lilium sect. Expand
Lilium spp. pollen in China (Liliaceae): Taxonomic and Phylogenetic Implications and Pollen Evolution Related to Environmental Conditions
TLDR
Pollen sculpture patterns appear to reflect phylogenetic relationships and are useful for species or subsection delimitation, and evolution of an exine sculpture shows pollen type trends from Martagon → Callose → Concolor → Formosanum. Expand
...
1
2
3
...

References

SHOWING 1-10 OF 76 REFERENCES
Phylogenetic Analysis of Section Sinomartagon in Genus Lilium Using Sequences of the Internal Transcribed Spacer Region in Nuclear Ribosomal DNA
TLDR
The phylogenetic relationships of section Sinomartagon is postulates using 64 Lilium taxa and two related taxa based on nucleotide sequence variations in the internal transcribed spacer regions of nuclear ribosomal DNA to provide a more convincing phylogenetic position for Sinommartagon. Expand
Molecular phylogenetics of Hippophae L. (Elaeagnaceae) based on the internal transcribed spacer (ITS) sequences of nrDNA
TLDR
The phylogenetic relationships among 15 taxa of the genus Hippophae are analyzed by comparing sequences of the internal transcribed spacer region of nuclear ribosomal DNA (nrDNA) to support the monophyly of H. rhamnoides when H. gyantsensis Rousi was excxluded. Expand
A Molecular Phylogeny of Lilium in the Internal Transcribed Spacer Region of Nuclear Ribosomal DNA
TLDR
The phylogeny derived from ITS sequences estimated using maximum-likelihood methods indicated that most of the species construct their own clade according to the classification based on morphological features at the section level. Expand
A molecular phylogeny of the genus Gagea (Liliaceae) in Germany inferred from non-coding chloroplast and nuclear DNA sequences
TLDR
Analysis of the ITS region shows that G. pomeranica represents a hybrid of G. pratensis and G. lutea, and two subspecies of Gagea bohemica are characterized by trnL-trnF data and morphological features. Expand
Phylogenetic Relationships among Lilium auratum Lindley, L. auratum var. platyphyllum Baker and L. rubellum Baker Based on Three Spacer Regions in Chloroplast DNA
TLDR
The phylogenetic relationships of section Archelirion (genus Lilium) are postulated based on the nucleotide sequence variations of three spacer regions in chloroplast DNA, trnT-trnL,trnF and atpB-rbcL, which provide a more convincing phylogenetic relationship within section Archeirion. Expand
Molecular systematics of Lilium and allied genera (Liliaceae): phylogenetic relationships among Lilium and related genera based on the rbcL and matK gene sequence data
TLDR
Phylogenetic analyses based on the majority rule of the sequence data of matK gene revealed that the genus Lilium consists of three different major clades, including taxa that were placed into different sections by earlier taxonomic treatments, and thus the results of molecular systematic analysis was not congruent with sectional delimitations of the genus liliumbased on the morphological characters. Expand
ITS DNA sequence relationships between Lilium concolor Salisb., L. dauricum Ker-Gawl. and their putative hybrid, L. maculatum Thunb.
TLDR
The phylogenetic tree, in conjunction with the distribution pattern and morphological similarities of the two species, suggest that L. maculatum is derived from the more widely distributed L. dauricum. Expand
Phylogenetic relationships and genetic diversity among members of theFestuca-Lolium complex (Poaceae) based on ITS sequence data
TLDR
This study is unique in suggesting a third, basalFestuca clade, but support for the basal position of this group is low, and polyploid species harbor higher levels of ITS sequence diversity than diploids; ITS sequence variants may provide clues to the identity of allopolyploid parents. Expand
Phylogenetic analysis of the internal transcribed spacer region of Japanese Lilium species
TLDR
Phylogenetic analysis of the ITS sequences supported the validity of Comber’s classification system and provided molecular evidence for the transfer of Lilium dauricum to sect. Expand
Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution.
TLDR
Reconstruction of reticulate evolution with sequence data provides gene records for distributional histories of some of the parental species and demonstrates that the sequence data could be highly informative and accurate for detecting hybridization. Expand
...
1
2
3
4
5
...