Molecular identification of a new begomovirus associated with leaf crumple disease of Jatropha curcas L. in India

@article{Srivastava2014MolecularIO,
  title={Molecular identification of a new begomovirus associated with leaf crumple disease of Jatropha curcas L. in India},
  author={Ashish Srivastava and Meraj Jaidi and S K Kumar and Shri Krishna Raj},
  journal={Archives of Virology},
  year={2014},
  volume={160},
  pages={617-619}
}
Association of a new begomovirus with leaf crumple disease of Jatropha curcas was identified based on sequence analysis of cloned ~2.7-kb viral DNA genomes from three representative samples amplified by RCA using phi-29 DNA polymerase. Sequence analysis of these isolates SKJ1 (KM066975), SKJ2 (KM189818) and SKJ3 (KM189819)—showed the presence of a monopartite begomovirus-like genome of 2,735 to 2,738 nucleotides containing seven ORFs: V3, V2 and V1 in virion sense and C3, C2, C1 and C4 in the… 
Molecular characterization of a new begomovirus associated with leaf yellow mosaic disease of Jatropha curcas in India
TLDR
The begomovirus isolates associated with leaf yellow mosaic disease of J. curcas were identified as members of a new begoovirus species and provisionally designated as jatropha leafYellow mosaic Katerniaghat virus (JLYMKV).
Detection of begomovirus in plants of Jatropha curcas L., in Chiapas, Mexico.
TLDR
This work reports the first report of begomovirus infecting Jatropha curcas L. plants in southern Mexico, representing the most promising non-edible plant for the biofuel industry in the world.
The Current Status of New Emerging Begomovirus Diseases on JatrophaSpecies from India
TLDR
The status of the work used and the results obtained in methodology for identification and characterization of begomovirus isolates associated with symptomatology like mosaic disease of Jatropha species grown in India, are presented in this review article.
Barcoding of Plant Viruses with Circular Single-Stranded DNA Based on Rolling Circle Amplification
TLDR
Current state methods for quarantine measures are described to identify individual DNA components with great accuracy and to recognize the crucial role of the molecular viral population structure as an important factor for sustainable plant protection.
Evidence of Association of Begomovirus with the Yellow vein Disease of an Ornamental Plant Pot Marigold (Calendula officinalis) from Western Uttar Pradesh
TLDR
This poster presents a probabilistic procedure that can be used to estimate the temperature and salinity of the phytochemical components of manure before and after it is processed for human consumption.

References

SHOWING 1-10 OF 14 REFERENCES
Biological Characterization and Complete Genome Sequence of a Possible Strain of Indian cassava mosaic virus from Jatropha curcas in India
TLDR
The virus isolate identified as a possible strain of Indian cassava mosaic virus, and its name Jatropha mosaic India virus (JMIV) is proposed because of the guidelines of the International Committee on Taxonomy of Viruses.
Molecular identification of a new begomovirus associated with mosaic disease of Jatropha curcas L. in Nigeria
TLDR
Pairwise comparisons of DNA-A sequences showed that JMNV had maximum nucleotide sequence identity (72%) with a strain of tomato yellow leaf curl virus, which may represent a significant threat to a promising bioenergy crop.
Diversity and distribution of begomoviruses infecting tomato in India
TLDR
Two new begomovirus species, papaya leaf curl virus and Pepper leaf curl Bangladesh virus sequences were detected in tomato, and all four known TLCBs appeared to be present throughout India.
First molecular identification of a begomovirus in India that is closely related toCassava mosaic virus and causes mosaic and stunting ofJatropha curcas L.
The association of a begomovirus with Jatropha mosaic disease has been found in north India. The begomovirus possessed highest identities and closest relationships withIndian andSri Lankan cassava
Biotechnological approaches to determine the impact of viruses in the energy crop plant Jatropha curcas
TLDR
Cassava geminiviruses occurring in Jatropha might be spread wider than anticipated, and if not taken care of, this virus infection might negatively impact large scale plantations for biofuel production.
Geminivirus strain demarcation and nomenclature
TLDR
The status of geminivirus species and strain demarcation is reviewed as well as providing updated isolate descriptors for a total of 672 begomovirus isolates, and several others previously classified as “strains” have been upgraded to “species”.
A new strain of Indian cassava mosaic virus causes a mosaic disease in the biodiesel crop Jatropha curcas
TLDR
The complete nucleotide sequences of a Jatropha virus isolated from Dharwad, Southern India suggest it is a new strain of Indian cassava mosaic virus, thereby fulfilling Koch’s postulates.
Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses
TLDR
Degenerate PCR primers were designed to anneal to highly conserved nucleotide sequences identified in the genomes of 10 whitefly-transmitted geminiviruses, and tested for their effectiveness in the amplification of viral DNA fragments from the DNA-A and/or DNA-B components of 15 previously uncharacterized geminIViruses.
TempliPhi, phi29 DNA polymerase based rolling circle amplification of templates for DNA sequencing.
TLDR
A novel, isothermal DNA amplification strategy that employs phi29 DNA polymerase and rolling circle amplification to generate high-quality templates for DNA sequencing reactions and its use in applications such as amplification ofhuman genomic DNA for genotyping studies is discussed.
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
TLDR
An advanced version of the Molecular Evolutionary Genetics Analysis software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, is released, which enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny.
...
...