Molecular dynamics simulation of nucleic acids.

  title={Molecular dynamics simulation of nucleic acids.},
  author={Thomas E. Cheatham and Peter A. Kollman},
  journal={Annual review of physical chemistry},
We review molecular dynamics simulations of nucleic acids, including those completed from 1995 to 2000, with a focus on the applications and results rather than the methods. After the introduction, which discusses recent advances in the simulation of nucleic acids in solution, we describe force fields for nucleic acids and then provide a detailed summary of the published literature. We emphasize simulations of small nucleic acids ( approximately 6 to 24 mer) in explicit solvent with counterions… CONTINUE READING

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