ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality

@article{SzalayBeko2012ModuLandPF,
  title={ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality},
  author={M{\'a}t{\'e} Szalay-Beko and Robin Palotai and Bal{\'a}zs Szappanos and Istv{\'a}n A. Kov{\'a}cs and B. Papp and P. Csermely},
  journal={Bioinformatics},
  year={2012},
  volume={28 16},
  pages={
          2202-4
        }
}
  • Máté Szalay-Beko, Robin Palotai, +3 authors P. Csermely
  • Published 2012
  • Computer Science, Physics, Biology, Medicine
  • Bioinformatics
  • UNLABELLED The ModuLand plug-in provides Cytoscape users an algorithm for determining extensively overlapping network modules. Moreover, it identifies several hierarchical layers of modules, where meta-nodes of the higher hierarchical layer represent modules of the lower layer. The tool assigns module cores, which predict the function of the whole module, and determines key nodes bridging two or multiple modules. The plug-in has a detailed JAVA-based graphical interface with various colouring… CONTINUE READING
    90 Citations
    User Guide for ModuLand Cytoscape plug-in
    • 2012
    • Highly Influenced
    • PDF
    BMTK: a toolkit for determining modules in biological bipartite networks
    • PDF
    ClustEx2: Gene Module Identification using Density-Based Network Hierarchical Clustering
    BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats
    • 56
    • PDF
    NetCore: a network propagation approach using node coreness
    • PDF
    Comparative analysis of differential network modularity in tissue specific normal and cancer protein interaction networks
    • 16
    • Highly Influenced
    • PDF
    The Effect of Edge Definition of Complex Networks on Protein Structure Identification
    • 5
    • PDF
    Searching for network modules
    • G. Rossi
    • Mathematics, Computer Science
    • ArXiv
    • 2018
    • PDF
    Spatiotemporal positioning of multipotent modules in diverse biological networks
    • 6

    References

    SHOWING 1-10 OF 73 REFERENCES
    NeMo: Network Module identification in Cytoscape
    • 112
    MINE: Module Identification in Networks
    • 90
    • PDF
    clusterMaker: a multi-algorithm clustering plugin for Cytoscape
    • 331
    Functional cartography of complex metabolic networks
    • 2,559
    • PDF
    GLay: community structure analysis of biological networks
    • 162
    • PDF
    Deciphering the connectivity structure of biological networks using MixNet
    • 44
    • PDF