Modified screening and ranking algorithm for copy number variation detection

@article{Xiao2015ModifiedSA,
  title={Modified screening and ranking algorithm for copy number variation detection},
  author={Feifei Xiao and Xiaoyi Min and Heping Zhang},
  journal={Bioinformatics},
  year={2015},
  volume={31 9},
  pages={
          1341-8
        }
}
MOTIVATION Copy number variation (CNV) is a type of structural variation, usually defined as genomic segments that are 1 kb or larger, which present variable copy numbers when compared with a reference genome. The screening and ranking algorithm (SaRa) was recently proposed as an efficient approach for multiple change-points detection, which can be applied to CNV detection. However, some practical issues arise from application of SaRa to single nucleotide polymorphism data. RESULTS In this… CONTINUE READING
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