MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results.

@article{Helsens2007MascotDatfileAO,
  title={MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results.},
  author={Kenny Helsens and Lennart Martens and Jo{\"e}l Vandekerckhove and Kris Gevaert},
  journal={Proteomics},
  year={2007},
  volume={7 3},
  pages={364-6}
}
MS-based protein identification is an important part of both gel-based and gel-free proteome studies. The MASCOT search engine (http://www.matrixscience.com) provides one of the most popular automated algorithms for this task. Here we present an open-source software library written in Java that parses raw MASCOT results into an easily accessible and fully functional object model (http://genesis.ugent.be/MascotDatfile). Several scripts based on this library are provided as examples, allowing… CONTINUE READING

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