Mapping of gene-specific markers on the genetic map of chickpea ( Cicer arietinum L.)

@article{Pfaff2003MappingOG,
  title={Mapping of gene-specific markers on the genetic map of chickpea ( Cicer arietinum L.)},
  author={T. Pfaff and G{\"u}nter Kahl},
  journal={Molecular Genetics and Genomics},
  year={2003},
  volume={269},
  pages={243-251}
}
  • T. Pfaff, G. Kahl
  • Published 12 March 2003
  • Biology, Medicine
  • Molecular Genetics and Genomics
With the exception of the fact that it is made up of eight different chromosomes, the physical organization of the 738-Mb genome of the important legume crop chickpea (Cicer arietinum L.) is unknown. In an attempt to increase our knowledge of the basic structure of this genome, we determined the map positions of a series of genes involved in plant defence responses (DR) by genetic linkage analysis. Exploiting the sequence data available in GenBank, we selected genes known to be induced in… 
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Low levels of polymorphism and lack of sufficient numbers of molecular markers such as microsatellite or simple sequence repeats (SSRs) are the main constraints in chickpea improvement. Hence to
Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.)
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References

SHOWING 1-10 OF 64 REFERENCES
Construction of a Chickpea Linkage Map and Its Comparison With Maps of Pea and Lentil
TLDR
An integrated genetic linkage map of chickpea (Clcei) has been developed that consists of 9 morphological, 27 isozyme, 10 RFLP, and 45 RAPD markers covering 550 cM, indicating considerable divergence of these genomes at the sequence level.
A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum×C. reticulatum cross: localization of resistance genes for fusarium wilt races 4 and 5
TLDR
The integrated molecular marker map of the chickpea genome was established using 130 recombinant inbred lines from a wide cross between a cultivar resistant to fusarium wilt caused by Fusarium oxysporum Schlecht to serve as a basis for marker-assisted selection and map-based cloning of fusaria wilt resistance genes and other agronomically important genes in future.
Characterization and mapping of sequence-tagged microsatellite sites in the chickpea (Cicer arietinum L.) genome
TLDR
The present STMS marker map represents the most advanced co-dominant DNA marker map of the chickpea genome and was genetically mapped in 90 recombinant inbred lines from an inter-species cross between C. reticulatum and C. echinospermum.
Inheritance and linkage of a gene for resistance to race 4 of fusarium wilt and RAPD markers in chickpea
TLDR
Results indicated that resistance is controlled by a single recessive gene in Fusarium oxysporum Schlechtend and the genes for resistance to race 1 and 4 are 5 map units apart.
The development of codominant PCR/RFLP based markers for the flax rust-resistance alleles at the L locus
TLDR
The application of PCR markers to a set of 22 cultivars verifies genetic studies done by previous workers and demonstrates the usefulness of the markers for following segregation of L alleles in crosses amongst wide or narrow selections of cultivars.
Use of molecular markers in breeding for oligogenic disease resistance
TLDR
The current and potential uses of molecular markers in breeding for oligogenic resistance traits and advantages of marker-facilitated selection for resistance genes under a variety of special circumstances are discussed.
Development of S-SAP markers based on an LTR-like sequence from Medicago sativa L.
TLDR
Application of the Tms1 LTR-based S-SAP to double-stranded cDNA resulted in a complex banding pattern, demonstrating the presence of Tms2 LTRs within exons, and should prove suitable for studying genetic diversity within, and relatedness between, alfalfa species.
Sequence-tagged microsatellite site markers for chickpea (Cicer arietinum L.).
TLDR
Two small-insert genomic libraries of chickpea were screened with a set of microsatellite-specific oligonucleotide probes and Mendelian inheritance of CaSTMS markers was demonstrated using aSet of recombinant inbred lines and their parents.
Inheritance and linkage relationships of morphological and isozyme loci in chickpea (Cicer arietinum L.)
TLDR
Results suggest that pea, lentil and chickpea have several common linkage groups consisting of homologous genes, and indicates that linkages found in one genus can be used to predict similar linkages in related genera in the development of linkage maps.
Genetic relationships among annual species of Cicer(Fabaceae) using isozyme variation
TLDR
The results suggest that the annual habit arose from perennial progenitors at least twice in the genus Cicer, which has a very distinct isozyme profile and peculiar morphological features.
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