MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads

Abstract

Next-generation sequencing technologies provide exciting avenues for studies of transcriptomics and population genomics. There is an increasing need to conduct spliced and unspliced alignments of short transcript reads onto a reference genome and estimate minor allele frequency from sequences of population samples. We have designed and implemented MapNext… (More)
DOI: 10.1186/1471-2164-10-S3-S13

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