MULTICLUSTAL: a systematic method for surveying Clustal W alignment parameters

@article{Yuan1999MULTICLUSTALAS,
  title={MULTICLUSTAL: a systematic method for surveying Clustal W alignment parameters},
  author={Jeffrey Yuan and Angela Amend and Joseph Borkowski and Reynold DelMarco and Wendy Bailey and Yuan Liu and Guochun Xie and Richard Blevins},
  journal={Bioinformatics},
  year={1999},
  volume={15 10},
  pages={862-3}
}
MULTICLUSTAL is a Perl script designed to automate the process of alignment parameter choice for Clustal W with the goal of generating high quality multiple sequence alignments. 

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