MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments

@article{Choi2014MSstatsAR,
  title={MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments},
  author={Meena Choi and Ching-Yun Chang and Timothy Clough and Daniel Broudy and Trevor Killeen and Brendan MacLean and Olga Vitek},
  journal={Bioinformatics},
  year={2014},
  volume={30 17},
  pages={2524-6}
}
UNLABELLED MSstats is an R package for statistical relative quantification of proteins and peptides in mass spectrometry-based proteomics. Version 2.0 of MSstats supports label-free and label-based experimental workflows and data-dependent, targeted and data-independent spectral acquisition. It takes as input identified and quantified spectral peaks, and outputs a list of differentially abundant peptides or proteins, or summaries of peptide or protein relative abundance. MSstats relies on a… CONTINUE READING
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