MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

@inproceedings{Wang2012MCScanXAT,
  title={MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity},
  author={Yupeng Wang and Haibao Tang and Jeremy D. DeBarry and Xu Tan and Jingping Li and Xiyin Wang and Tae-ho Lee and Huizhe Jin and Barry S. Marler and Hui Ming Guo and Jessica C. Kissinger and Andrew H. Paterson},
  booktitle={Nucleic acids research},
  year={2012}
}
MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. The MCScanX toolkit implements an adjusted MCScan algorithm for detection of synteny and collinearity that extends the original software by incorporating 14 utility programs for visualization of results and additional downstream analyses. Applications of MCScanX to several sequenced plant genomes and gene families are… CONTINUE READING

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