MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.

@article{Campbell2014MAKERPAT,
  title={MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.},
  author={Mary Stinecipher Campbell and Meiyee Law and Carson Holt and Joshua C. Stein and Gaurav D Moghe and David E. Hufnagel and Jikai Lei and Rujira Achawanantakun and Dian Jiao and Carolyn Joy Lawrence and Doreen Ware and Shin-Han Shiu and Kevin L. Childs and Yanni Sun and Ning Jiang and Mark Yandell},
  journal={Plant physiology},
  year={2014},
  volume={164 2},
  pages={
          513-24
        }
}
We have optimized and extended the widely used annotation engine MAKER in order to better support plant genome annotation efforts. New features include better parallelization for large repeat-rich plant genomes, noncoding RNA annotation capabilities, and support for pseudogene identification. We have benchmarked the resulting software tool kit, MAKER-P, using the Arabidopsis (Arabidopsis thaliana) and maize (Zea mays) genomes. Here, we demonstrate the ability of the MAKER-P tool kit to… CONTINUE READING

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