MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations1[W][OPEN]

@article{Campbell2013MAKERPAT,
  title={MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations1[W][OPEN]},
  author={Michael Campbell and Meiyee Law and Carson Holt and Joshua C. Stein and Gaurav D. Moghe and David E. Hufnagel and Jikai Lei and Rujira Achawanantakun and Dian Jiao and Carolyn J. Lawrence-Dill and Doreen H Ware and Shin-han Shiu and Kevin L. Childs and Yanni Sun and Ning Jiang and Mark Yandell},
  journal={Plant Physiology},
  year={2013},
  volume={164},
  pages={513 - 524}
}
MAKER-P annotates the entire Arabidopsis and maize genomes in less than 3 h with comparable quality to the current TAIR10 and maize V2 annotation builds. We have optimized and extended the widely used annotation engine MAKER in order to better support plant genome annotation efforts. New features include better parallelization for large repeat-rich plant genomes, noncoding RNA annotation capabilities, and support for pseudogene identification. We have benchmarked the resulting software tool kit… 

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