Lossless filter for multiple repeats with bounded edit distance


Identifying local similarity between two or more sequences, or identifying repeats occurring at least twice in a sequence, is an essential part in the analysis of biological sequences and of their phylogenetic relationship. Finding such fragments while allowing for a certain number of insertions, deletions, and substitutions, is however known to be a… (More)
DOI: 10.1186/1748-7188-4-3


13 Figures and Tables