Large Multiple Organism Gene Finding by Collapsed Gibbs Sampling

@article{Chatterji2005LargeMO,
  title={Large Multiple Organism Gene Finding by Collapsed Gibbs Sampling},
  author={Sourav Chatterji and Lior Pachter},
  journal={Journal of Computational Biology},
  year={2005},
  volume={12},
  pages={599-608}
}
The Gibbs sampling method has been widely used for sequence analysis after it was successfully applied to the problem of identifying regulatory motif sequences upstream of genes. Since then, numerous variants of the original idea have emerged: however, in all cases the application has been to finding short motifs in collections of short sequences (typically less than 100 nucleotides long). In this paper, we introduce a Gibbs sampling approach for identifying genes in multiple large genomic… CONTINUE READING
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References

Publications referenced by this paper.
Showing 1-10 of 20 references

Genome sequence of the brown Norway rat yields insights into mammalian evolution

  • R. G. S. Consortium
  • Nature
  • 2004

Comparative analyses of multi-species sequences from targeted genomic

  • J.W
  • Assoc
  • 2003

Phylogenetic shadowing

  • D. Boffeli, J. McAuliffe, K. D. Lewis, I. Ovcharenko, L. Pachter, E. M. Rubin
  • Markov model. Genome Res
  • 2003

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