Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: Ab initio fragment molecular orbital study

@article{Fukuzawa2006IntraAI,
  title={Intra- and intermolecular interactions between cyclic-AMP receptor protein and DNA: Ab initio fragment molecular orbital study},
  author={Kaori Fukuzawa and Yuto Komeiji and Yuji Mochizuki and Akifumi Kato and Tatsuya Nakano and Shigenori Tanaka},
  journal={Journal of computational chemistry},
  year={2006},
  volume={27 8},
  pages={948-60}
}
The ab initio fragment molecular orbital (FMO) calculations were performed for the cAMP receptor protein (CRP) complexed with a cAMP and DNA duplex to elucidate their sequence-specific binding and the stability of the DNA duplex, as determined by analysis of their inter- and intramolecular interactions. Calculations were performed with the AMBER94 force… CONTINUE READING