Corpus ID: 218684907

Inference, prediction and optimization of non-pharmaceutical interventions using compartment models: the PyRoss library

@article{Adhikari2020InferencePA,
  title={Inference, prediction and optimization of non-pharmaceutical interventions using compartment models: the PyRoss library},
  author={R. Adhikari and Austen Bolitho and F. Caballero and M. E. Cates and J. Dolezal and T. Ekeh and J. Guioth and R. L. Jack and J. Kappler and Lukas Kikuchi and H. Kobayashi and Y. Li and J. D. Peterson and Patrick Pietzonka and Benjamin Remez and P. Rohrbach and R. Singh and Gunther Turk},
  journal={arXiv: Populations and Evolution},
  year={2020}
}
  • R. Adhikari, Austen Bolitho, +15 authors Gunther Turk
  • Published 2020
  • Computer Science, Biology, Physics
  • arXiv: Populations and Evolution
  • PyRoss is an open-source Python library that offers an integrated platform for inference, prediction and optimisation of NPIs in age- and contact-structured epidemiological compartment models. This report outlines the rationale and functionality of the PyRoss library, with various illustrations and examples focusing on well-mixed, age-structured populations. The PyRoss library supports arbitrary structured models formulated stochastically (as master equations) or deterministically (as ODEs) and… CONTINUE READING
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    References

    SHOWING 1-10 OF 48 REFERENCES
    EpiModel: An R Package for Mathematical Modeling of Infectious Disease over Networks.
    • 66
    • PDF
    The construction of next-generation matrices for compartmental epidemic models
    • 810
    • PDF
    Projecting social contact matrices in 152 countries using contact surveys and demographic data
    • 271
    • PDF
    Effects of the infectious period distribution on predicted transitions in childhood disease dynamics
    • 59
    • PDF
    Fast Bayesian inference of the multivariate Ornstein-Uhlenbeck process.
    • 14
    • PDF