Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding

Abstract

An encoding scheme for protein folding on lattice models, inspired by parametric L-systems, was proposed. The encoding incorporates problem domain knowledge in the form of predesigned production rules that capture commonly known secondary structures: α-helices and β-sheets. The ability of this encoding to capture protein native conformations was tested… (More)
DOI: 10.1007/11740698_22

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