In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides.

@article{Roller1995InSP,
  title={In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides.},
  author={C. Roller and Michael Wagner and Rudolf I. Amann and Wolfgang Ludwig and Karl Heinz Schleifer},
  journal={Microbiology},
  year={1995},
  volume={141 ( Pt 5)},
  pages={
          1267
        }
}
Lehrstuhl fur Mikrobiologie, Tec hn isc he U n ive rsitat Munchen, ArcisstraBe 16, D80290 Mu nchen, Germany 235-rRNA-targeted oligonucleotide probes were designed for the phylogenetic group Gram-positive bacteria with high G + C content of DNA ' (GPBHGC). A sequence idiosyncrasy in two adjacent base pairs in the stem of helix 69 in domain IV of the 235 rRNA is present in all hitherto analysed strains of GPBHGC. An oligonucleotide probe targeted to this region hybridized only with strains of… 

Figures and Tables from this paper

Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment.
TLDR
A panel of four 16S rRNA-targeted oligonucleotide probes specific for bacteria of the phylum cytophaga-flavobacter-bacteroides (CFB) were designed and used together with other higher-order probes to analyse the structure and community composition in complex environments.
In situ identification of nocardioform actinomycetes in activated sludge using fluorescent rRNA-targeted oligonucleotide probes.
TLDR
The combination of in situ hybridization with fluorescently labelled rRNA-targeted oligonucleotide probes and confocal laser scanning microscopy improved the detection of nocardioform actinomycetes, which often showed only weak signals inside the activated-sludge flocs.
In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenes.
TLDR
Application of the new signal amplification technique resulted in strong signals comparable in intensity to those obtained with fluorescently labeled rRNA-targeted oligonucleotide probes.
Order-specific 16S rRNA-targeted oligonucleotide probes for (hyper)thermophilic archaea and bacteria
TLDR
It was shown that in addition to its function as a probe for Aquificales, Aqui1197 is suitable as a supplementary probe to extend the coverage of the domain-specific bacterial probe EUB338.
Differential enumeration and in situ localization of microorganisms in the hindgut of the lower termite Mastotermes darwiniensis by hybridization with rRNA-targeted probes
TLDR
The abundance and spatial distribution of major phylogenetic groups of the domain Bacteria in hindguts of the Australian lower termite Mastotermes darwiniensis is examined by using in situ hybridization with group-specific, fluorescently labeled, rRNA-targeted oligonucleotide probes, indicating that the hindgut microhabitats differ in the composition of their microbial community.
Design and Evaluation of 16S rRNA-Targeted Peptide Nucleic Acid Probes for Whole-Cell Detection of Members of the Genus Listeria
TLDR
Six fluorescein-labeled peptide nucleic acid oligomers targeting Listeria-specific sequences on the 16S ribosomal subunit were evaluated for their abilities to hybridize to whole cells by fluorescence in situ hybridization (FISH) and LisUn-11 was the brightest probe and stained all six Listersia species.
Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization.
Fluorescence in situ hybridization (FISH) of whole cells using 16S rRNA-targeted oligonucleotide probes is a powerful technique with which to evaluate the phylogenetic identity, morphology, number,
Community Analysis of Biofilters Using Fluorescence In Situ Hybridization Including a New Probe for theXanthomonas Branch of the ClassProteobacteria
TLDR
The Xanthomonas-specific probe presented here may serve as an efficient tool for identifying potential phytopathogens and in situ hybridization proved to be a practical tool for microbiological studies of biofiltration systems.
Phylogenetic analysis and in situ identification of bacteria in activated sludge
TLDR
The bacterial community structure of activated sludge of a large municipal wastewater treatment plant was investigated by use of the rRNA approach, and potentially pathogenic representatives of the genus Arcobacter were present in significant numbers in theactivated sludge sample examined.
...
1
2
3
4
5
...

References

SHOWING 1-10 OF 55 REFERENCES
Identification of Whole Fixed Bacterial Cells with Nonradioactive 23S rRNA-Targeted Polynucleotide Probes
TLDR
Identification of introduced test organisms in activated-sludge samples proved the applicability of this method for the in situ identification of microorganisms in complex microbial communities.
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
TLDR
Fluorescent-dye-conjugated oligonucleotides were used to classify 14 Fibrobacter strains by fluorescence microscopy and the direct detection of F. intestinalis in mouse cecum samples demonstrated the application of this technique to the characterization of complex natural samples.
Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes.
An insertion of about 100 bases within the central part of the 23S rRNA genes was found to be a phylogenetic marker for the bacterial line of descent of Gram-positive bacteria with a high DNA G + C
Frankia genus-specific characterization by polymerase chain reaction
TLDR
A test to determine whether a given actinomycete isolated from an actinorhiza (nodule) belongs to the genus Frankia or is a contaminant is developed, based on the PCR.
Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure
TLDR
Community structures determined with molecular techniques were compared with the composition of the heterotrophic saprophyte flora isolated on nutrient-rich medium and culture-dependent community structure analysis of activated sludge produced partial and heavily biased results.
Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides.
TLDR
This technique has the potential for significant signal amplification as compared to the fluorescently end-labelled oligonucleotides hitherto used for single cell identification in microbial ecology and can be used instead of fluorescent assays in natural samples showing autofluorescence.
Detection of micro-organisms in soil after in situ hybridization with rRNA-targeted, fluorescently labelled oligonucleotides.
rRNA sequences were used as targets for synthetic oligonucleotides labelled with the fluorescent dye tetramethylrhodamine isothiocyanate (Tritc) for in situ hybridizations to detect micro-organisms
Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
To address the long-standing need for more precise descriptions of natural microbial ecosystems, 16S rRNAs were used to track certain species and phylogenetically coherent groups of microorganisms in
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms.
TLDR
A combination of fluorescent rRNA-targeted oligonucleotide probes ("phylogenetic stains") and flow cytometry was used for a high resolution automated analysis of mixed microbial populations and could demonstrate a linear correlation between growth rate and probe-conferred fluorescence of Escherichia coli and Pseudomonas cepacia cells.
...
1
2
3
4
5
...