Identifying protein complexes in dynamic protein-protein interaction networks based on Cuckoo Search algorithm

@article{Zhao2016IdentifyingPC,
  title={Identifying protein complexes in dynamic protein-protein interaction networks based on Cuckoo Search algorithm},
  author={Jie Zhao and Xiujuan Lei and Fang-Xiang Wu},
  journal={2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
  year={2016},
  pages={1288-1295}
}
Protein complexes play a critical role in understanding the function of cell machinery. The existing protein complex detection algorithms are mostly cannot reflect the dynamics of protein complexes. In this paper, a novel algorithm named cuckoo search clustering algorithm (CSCA) is proposed to detect protein complexes in dynamic protein-protein interaction networks (DPIN) inspired by cuckoo search (CS) mechanism. First, we constructed dynamic protein networks and detected protein complex cores… CONTINUE READING

References

Publications referenced by this paper.
Showing 1-10 of 29 references

Marashi, "PCD-GED:Protein complex detection considering PPI dynamics based on time series gene expression data

  • A Lakizadeh, S.A.S. Jalili
  • Journal of Theoretical Biology,
  • 2015

Protein complex detection considering PPI dynamics based on time series gene expression data "

  • S. Jalili A Lakizadeh, S. A. Marashi
  • Journal of Theoretical Biology
  • 2015

" A New Algorithm for Data Clustering Based on Cuckoo Search Optimization " , 1

  • V. Das Senthilnath, S. N. Omkar, V. Mani
  • Genetic and Evolutionary Computing .
  • 2014

A New Algorithm for Data Clustering Based on Cuckoo Search Optimization

  • LB. Saida, K. Nadjet, B Omar
  • Genetic and Evolutionary Computing
  • 2014

Dordevi6, "Cuckoo Search algorithm: A metaheuristic approach to solving the problem of optimum synthesis of a six-bar double dwell linkage

  • R. R. Bulatovi, V.S.S.R. Dordevi
  • J. Mechanism and Machine Theory 61,
  • 2013

Similar Papers

Loading similar papers…