Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs

@inproceedings{Leggett2013IdentifyingAC,
  title={Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs},
  author={Richard M. Leggett and Ricardo H Ramirez-Gonzalez and Walter Verweij and Cintia Goulart Kawashima and Zamin Iqbal and Jonathan D. G. Jones and Mario C{\'a}ccamo and Dan Maclean},
  booktitle={PloS one},
  year={2013}
}
Single Nucleotide Polymorphisms are invaluable markers for tracing the genetic basis of inheritable traits and the ability to create marker libraries quickly is vital for timely identification of target genes. Next-generation sequencing makes it possible to sample a genome rapidly, but polymorphism detection relies on having a reference genome to which reads can be aligned and variants detected. We present Bubbleparse, a method for detecting variants directly from next-generation reads without… CONTINUE READING
Highly Cited
This paper has 27 citations. REVIEW CITATIONS
Recent Discussions
This paper has been referenced on Twitter 29 times over the past 90 days. VIEW TWEETS
13 Citations
11 References
Similar Papers

Citations

Publications citing this paper.
Showing 1-10 of 13 extracted citations

References

Publications referenced by this paper.
Showing 1-10 of 11 references

Similar Papers

Loading similar papers…