Identification of structural domains in proteins by a graph heuristic.

  title={Identification of structural domains in proteins by a graph heuristic.},
  author={Lorenz Wernisch and Mark Hunting and Shoshana J. Wodak},
  volume={35 3},
A novel automatic procedure for identifying domains from protein atomic coordinates is presented. The procedure, termed STRUDL (STRUctural Domain Limits), does not take into account information on secondary structures and handles any number of domains made up of contiguous or non-contiguous chain segments. The core algorithm uses the Kernighan-Lin graph heuristic to partition the protein into residue sets which display minimum interactions between them. These interactions are deduced from the… CONTINUE READING

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