Identification of drug-specific pathways based on gene expression data: application to drug induced lung injury.

@article{Melas2015IdentificationOD,
  title={Identification of drug-specific pathways based on gene expression data: application to drug induced lung injury.},
  author={Ioannis N. Melas and Theodore Sakellaropoulos and Francesco Iorio and Leonidas G. Alexopoulos and Wei-Yin Loh and Douglas A. Lauffenburger and Julio S{\'a}ez-Rodr{\'i}guez and Jane P. F. Bai},
  journal={Integrative biology : quantitative biosciences from nano to macro},
  year={2015},
  volume={7 8},
  pages={
          904-20
        }
}
Identification of signaling pathways that are functional in a specific biological context is a major challenge in systems biology, and could be instrumental to the study of complex diseases and various aspects of drug discovery. Recent approaches have attempted to combine gene expression data with prior knowledge of protein connectivity in the form of a PPI network, and employ computational methods to identify subsets of the protein-protein-interaction (PPI) network that are functional, based… 

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