IBM Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale.

@article{Seabolt2020IBMFG,
  title={IBM Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale.},
  author={Edward E. Seabolt and Gowri Nayar and Harsha Krishnareddy and Akshay Agarwal and Kristen L. Beck and I. Terrizzano and E. Kandogan and M. Roth and Vandana Mukherjee and J. Kaufman},
  journal={IEEE/ACM transactions on computational biology and bioinformatics},
  year={2020},
  volume={PP}
}
  • Edward E. Seabolt, Gowri Nayar, +7 authors J. Kaufman
  • Published 2020
  • Medicine, Mathematics, Biology, Computer Science
  • IEEE/ACM transactions on computational biology and bioinformatics
  • The rapid growth in biological sequence data is revolutionizing our understanding of genotypic diversity and challenging conventional approaches to informatics. Due to the increasing available genomic data, traditional bioinformatic tools require substantial computational time and the creation of ever-larger indices each time a researcher seeks to gain insight from the data. To address this, we pre-computed important relationships between biological entities spanning the Central Dogma of… CONTINUE READING

    References

    Publications referenced by this paper.
    SHOWING 1-10 OF 63 REFERENCES
    The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
    529
    KEGG: Kyoto Encyclopedia of Genes and Genomes
    11705
    KEGG: Kyoto Encyclopedia of Genes and Genomes
    11705
    Prokka: rapid prokaryotic genome annotation
    4358
    Prokka: rapid prokaryotic genome annotation
    4358
    SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    8815
    NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    3362
    NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    3362