Horizontal gene transfer accelerates genome innovation and evolution.

@article{Jain2003HorizontalGT,
  title={Horizontal gene transfer accelerates genome innovation and evolution.},
  author={Ravi Jain and Maria C. Rivera and Jonathan E. Moore and James Alan Lake},
  journal={Molecular biology and evolution},
  year={2003},
  volume={20 10},
  pages={
          1598-602
        }
}
Horizontal gene transfer (HGT) spreads genetic diversity by moving genes across species boundaries. By rapidly introducing newly evolved genes into existing genomes, HGT circumvents the slow step of ab initio gene creation and accelerates genome innovation. However, HGT can only affect organisms that readily exchange genes (exchange communities). In order to define exchange communities and understand the internal and external environmental factors that regulate HGT, we analyzed approximately 20… 

Figures from this paper

Horizontal gene transfer, genome innovation and evolution
TLDR
It is suggested that for many prokaryotes, the boundaries between species are fuzzy, and therefore the principles of population genetics must be broadened so that they can be applied to higher taxonomic categories.
Biased gene transfer in microbial evolution
TLDR
There is evidence that prokaryotes (bacteria and archaea) are more likely to transfer genetic material with their close relatives than with distantly related lineages, which can create phylogenetic signals that are difficult to distinguish from the signal created through shared ancestry.
The Role of Horizontal Gene Transfer in the Evolution of the Oomycetes
TLDR
Here, HGT is considered as an important factor contributing to genome evolution in the oomycetes and the role of pathogenic traits in eukaryotes is considered.
Horizontal gene transfer in the evolution of photosynthetic eukaryotes
TLDR
There is clear evidence that anciently acquired genes played an important role in the establishment of primary plastids and in the transition of plants from aquatic to terrestrial environments and reliable approaches are needed to distinguish endosymbionts‐derived genes from those independently acquired from preferential feeding or other activities.
Gene gain and gene loss in streptococcus: is it driven by habitat?
TLDR
This study indicates that the rate of gene ins/del is higher on the external branches and varies dramatically for each species, and concludes that at least a portion of these genes have a role in adaptation.
Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?
TLDR
Examination of gene translocations and lateral gene transfers in closely related genome pairs reveals that translocated genes undergo elevated rates of evolution and gene translocation tends to take place preferentially in recently acquired genes.
Conjugative plasmids: vessels of the communal gene pool
TLDR
The term supergenome is used to describe the set of all genes that a prokaryotic ‘individual’ can draw on within a particular environmental setting to obtain adaptability and functional diversity that alleviates the need for large genomes of specialized ‘private genes’.
Genomic islands: tools of bacterial horizontal gene transfer and evolution
TLDR
Genomic islands play a crucial role in the evolution of a broad spectrum of bacteria as they are involved in the dissemination of variable genes, including antibiotic resistance and virulence genes leading to generation of hospital ‘superbugs’, as well as catabolic genes lead to formation of new metabolic pathways.
Genome expansion in early eukaryotes drove the transition from lateral gene transfer to meiotic sex
TLDR
A theoretical model of a haploid population undergoing LGT which includes two new parameters, genome size and recombination length, neglected by previous theoretical models, can explain the strong selective pressure towards the evolution of sexual cell fusion and reciprocal recombination during early eukaryotic evolution.
Bacteria maintain Slightly Beneficial Genes and Selfish Genetic Elements through the evolution of Horizontal Gene Transfer
TLDR
Using modeling to study how bacterial growth rates are affected by HGT of slightly beneficial genes, if bacteria can evolve HGT to improve their growth rates, and when HGT is evolutionarily maintained in light of harmful SGEs, it is found that it can distinguish between four classes oflightly beneficial genes: indispensable, enrichable, rescuable, and unrescuable genes.
...
1
2
3
4
5
...

References

SHOWING 1-10 OF 52 REFERENCES
Horizontal gene transfer among genomes: the complexity hypothesis.
  • R. Jain, M. Rivera, J. Lake
  • Biology
    Proceedings of the National Academy of Sciences of the United States of America
  • 1999
TLDR
It is proposed that a major factor in the more frequent horizontal transfer of operational genes is that informational genes are typically members of large, complex systems, whereas operational genes are not, thereby making horizontalTransfer of informational gene products less probable (the complexity hypothesis).
Lateral gene transfer and the nature of bacterial innovation
Unlike eukaryotes, which evolve principally through the modification of existing genetic information, bacteria have obtained a significant proportion of their genetic diversity through the
Genetic exchange between bacteria in the environment.
TLDR
Understanding of the role of horizontal gene transfer in the environment is essential for the evaluation of the possible consequences of the deliberate environmental release of natural or recombinant bacteria for agricultural and bioremediation purposes.
Mosaic bacterial chromosomes: a challenge en route to a tree of genomes.
  • W. Martin
  • Biology
    BioEssays : news and reviews in molecular, cellular and developmental biology
  • 1999
TLDR
Quantitative estimates of comparatively recent genome flux have profound impact on evolutionary genome comparisons and tend to suggest that a search should be on to identify principles that might ultimately govern gene distribution patterns across prokaryotic genomes.
Horizontal transfer
Genomic evidence for two functionally distinct gene classes.
TLDR
Comparisons of the entire set of Methanococcus jannaschii genes with their orthologs from Escherichia coli, Synechocystis 6803, and the yeast Saccharomyces cerevisiae show that prokaryotic genomes consist of two different groups of genes.
Bacterial gene transfer by natural genetic transformation in the environment.
TLDR
The current understanding of the biology of transformation is summarized to provide the platform on which aspects of bacterial transformation in water, soil, and sediments and the habitat of pathogens are discussed.
Lateral genomics.
The complete genome sequence of Escherichia coli K-12.
TLDR
The 4,639,221-base pair sequence of Escherichia coli K-12 is presented and reveals ubiquitous as well as narrowly distributed gene families; many families of similar genes within E. coli are also evident.
Horizontal transfer of ATPase genes--the tree of life becomes a net of life.
...
1
2
3
4
5
...