HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

@inproceedings{Servant2015HiCProAO,
  title={HiC-Pro: an optimized and flexible pipeline for Hi-C data processing},
  author={Nicolas Servant and Nelle Varoquaux and Bryan R. Lajoie and Eric Viara and Chong-Jian Chen and Jean-Philippe Vert and Edith Heard and Job Dekker and Emmanuel Barillot},
  booktitle={Genome Biology},
  year={2015}
}
HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation products, performs quality controls and generates intra- and inter-chromosomal contact maps. It includes a fast implementation of the iterative correction method and is based on a memory-efficient data format for Hi-C contact maps. In addition, HiC-Pro can use phased genotype data to build allele-specific contact maps. We applied HiC-Pro to… CONTINUE READING
Recent Discussions
This paper has been referenced on Twitter 22 times over the past 90 days. VIEW TWEETS
56 Citations
25 References
Similar Papers

Citations

Publications citing this paper.
Showing 1-10 of 56 extracted citations

References

Publications referenced by this paper.
Showing 1-10 of 25 references

Cpipe : a pipeline for high - throughput chromosome capture

  • G Castellano, F LeDily, A HermosoPulido, M Beato, G Roma
  • bioRxiv
  • 2015

Hi-Cpipe: a pipeline for high-throughput chromosome capture

  • G Castellano, F Le Dily, A Hermoso Pulido, M Beato, G. Roma
  • bioRxiv
  • 2015
2 Excerpts

Similar Papers

Loading similar papers…