Hapsembler: An Assembler for Highly Polymorphic Genomes

@inproceedings{Donmez2011HapsemblerAA,
  title={Hapsembler: An Assembler for Highly Polymorphic Genomes},
  author={Nilgun Donmez and Michael Brudno},
  booktitle={RECOMB},
  year={2011}
}
As whole genome sequencing has become a routine biological experiment, algorithms for assembly of whole genome shotgun data has become a topic of extensive research, with a plethora of off-the-shelf methods that can reconstruct the genomes of many organisms. Simultaneously, several recently sequenced genomes exhibit very high polymorphism rates. For these organisms genome assembly remains a challenge as most assemblers are unable to handle highly divergent haplotypes in a single individual. In… CONTINUE READING

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