Graemlin: general and robust alignment of multiple large interaction networks.

@article{Flannick2006GraemlinGA,
  title={Graemlin: general and robust alignment of multiple large interaction networks.},
  author={Jason Flannick and Antal F. Novak and Balaji S. Srinivasan and Harley H. McAdams and Serafim Batzoglou},
  journal={Genome research},
  year={2006},
  volume={16 9},
  pages={1169-81}
}
The recent proliferation of protein interaction networks has motivated research into network alignment: the cross-species comparison of conserved functional modules. Previous studies have laid the foundations for such comparisons and demonstrated their power on a select set of sparse interaction networks. Recently, however, new computational techniques have produced hundreds of predicted interaction networks with interconnection densities that push existing alignment algorithms to their limits… CONTINUE READING

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