Geometrical Consistent 3D Tracing of Neuronal Processes in ssTEM Data

  title={Geometrical Consistent 3D Tracing of Neuronal Processes in ssTEM Data},
  author={Verena Kaynig and Thomas J. Fuchs and Joachim M. Buhmann},
  journal={Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention},
  volume={13 Pt 2},
In neuroanatomy, automatic geometry extraction of neurons from electron microscopy images is becoming one of the main limiting factors in getting new insights into the functional structure of the brain. We propose a novel framework for tracing neuronal processes over serial sections for 3d reconstructions. The automatic processing pipeline combines the probabilistic output of a random forest classifier with geometrical consistency constraints which take the geometry of whole sections into… CONTINUE READING

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