Geobacter luticola sp. nov., an Fe(III)-reducing bacterium isolated from lotus field mud.
@article{Viulu2013GeobacterLS, title={Geobacter luticola sp. nov., an Fe(III)-reducing bacterium isolated from lotus field mud.}, author={Samson Viulu and Kohei Nakamura and Yuri Okada and Sakiko Saitou and Kazuhiro Takamizawa}, journal={International journal of systematic and evolutionary microbiology}, year={2013}, volume={63 Pt 2}, pages={ 442-8 } }
A novel species of Fe(III)-reducing bacterium, designated strain OSK6(T), belonging to the genus Geobacter, was isolated from lotus field mud in Japan. Strain OSK6(T) was isolated using a solid medium containing acetate, Fe(III)-nitrilotriacetate (NTA) and gellan gum. The isolate is a strictly anaerobic, gram-negative, motile, straight rod-shaped bacterium, 0.6-1.9 µm long and 0.2-0.4 µm wide. The growth of the isolate occurred at 20-40 °C with optima of 30-37 °C and pH 6.5-7.5 in the presence…
21 Citations
Geobacter sulfurreducens subsp. ethanolicus, subsp. nov., an ethanol-utilizing dissimilatory Fe(III)-reducing bacterium from a lotus field.
- BiologyThe Journal of general and applied microbiology
- 2013
Results obtained from physiological, DNA-DNA hybridization, and chemotaxonomic tests support genotypic and phenotypic differentiation of strain OSK2A(T) from its closest relative.
Geobacter soli sp. nov., a dissimilatory Fe(III)-reducing bacterium isolated from forest soil.
- BiologyInternational journal of systematic and evolutionary microbiology
- 2014
A novel Fe(III)-reducing bacterium was isolated from a forest soil sample using a liquid medium containing acetate and ferrihydrite as electron donor and electron acceptor and is believed to represent a novel species of the genus Geobacter.
Geothermobacter hydrogeniphilus sp. nov., a mesophilic, iron(III)-reducing bacterium from seafloor/subseafloor environments in the Pacific Ocean, and emended description of the genus Geothermobacter.
- BiologyInternational journal of systematic and evolutionary microbiology
- 2021
Based on phylogenetic and phylogenomic analyses in addition to physiological and biochemical characteristics, both strains were found to represent a novel species within the genus Geothermobacter, for which the name GeotherMobacter hydrogeniphilus sp.
Isolation and Polyphasic Characterization of Desulfuromonas versatilis sp. Nov., an Electrogenic Bacteria Capable of Versatile Metabolism Isolated from a Graphene Oxide-Reducing Enrichment Culture
- BiologyMicroorganisms
- 2021
Based on the physiological and genetic uniqueness, and wide metabolic capability, strain NIT-T3 is proposed as a type strain of ‘Desulfuromonas versatilis’ sp.
Description of Three Novel Members in the Family Geobacteraceae, Oryzomonas japonicum gen. nov., sp. nov., Oryzomonas sagensis sp. nov., and Oryzomonas ruber sp. nov.
- BiologyMicroorganisms
- 2020
It is concluded that strains Red96T, Red100T, and Red88T represented three novel species of a novel genus in the family Geobacteraceae, for which the names Oryzomonas japonicum gen. nov. are proposed.
Effects of Aerobic Growth on the Fatty Acid and Hydrocarbon Compositions of Geobacter bemidjiensis BemT.
- BiologyJournal of oleo science
- 2017
It is concluded that anaerobically-grown G. bemidjiensis BemT followed by aerobiosis were enhanced in growth, fatty acid turnover, and de novo fatty acid synthesis.
Genome-Based Taxonomic Rearrangement of the Order Geobacterales Including the Description of Geomonas azotofigens sp. nov. and Geomonas diazotrophica sp. nov.
- BiologyFrontiers in Microbiology
- 2021
This taxonomic reassignment using currently available genome sequences, along with the description of two novel paddy soil-isolated strains, separated the species Geobacter luticola from other known genera and placed the genus Oryzomonas into the family ‘Pseudopelobacteraceae’; thus, a novel genus Geomobilimonas is proposed, and the family’s name was emended.
Isolation of microorganisms involved in reduction of crystalline iron(III) oxides in natural environments
- BiologyFront. Microbiol.
- 2015
High-throughput Illumina sequencing and clone library analysis revealed that the enrichment cultures on each of the ferric iron oxides contained bacteria belonging to the Deltaproteobacteria (mainly Geobacteraceae), followed by Firmicutes and Chloroflexi, which also comprised most of the operational taxonomic units (OTUs) identified.
The electrifying physiology of Geobacter bacteria, 30 years on.
- Biology, Environmental ScienceAdvances in microbial physiology
- 2019
Fe (III) reduction strategies of dissimilatory iron reducing bacteria
- BiologyKorean Journal of Chemical Engineering
- 2014
It is believed that the metabolic insights into the Fe (III) reduction systems of the model DIRB; Shewanella and Geobacter can be a basis for metabolic engineering to provide improved practical applications and the forthcoming years will see more applications of microbial iron reducers based on the existing as well as advanced metabolic informations available in open source literature.
35 References
Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.
- BiologyInternational journal of systematic and evolutionary microbiology
- 2007
Based on phylogenetic analysis and physiological tests, strain R7(T) is proposed to represent a novel genus and species, Pelosinus fermentans gen. nov., in the Sporomusa-Pectinatus-Selenomonas group.
Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals
- Biology, ChemistryArchives of Microbiology
- 2004
Profiles of the phospholipid ester-linked fatty acids indicated that both the anaerobic desaturase and the branched pathways for fatty acid biosynthesis were operative, and the 16S rRNA sequence indicated that this organism belongs in the delta proteobacteria.
Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.
- Biology, EngineeringInternational journal of systematic and evolutionary microbiology
- 2008
A Gram-negative, rod-shaped, motile bacterium, strain Rf4T, which conserves energy from dissimilatory Fe(III) reduction concomitant with acetate oxidation, was isolated from subsurface sediment…
Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination.
- BiologyInternational journal of systematic and evolutionary microbiology
- 2010
Strain FRC-32(T) was metabolically versatile and, unlike its closest relative, G. uraniireducens, was capable of utilizing formate, butyrate and butanol as electron donors and soluble ferric iron and elemental sulfur as electron acceptors, and is considered to represent a novel species of the genus Geobacter.
Desulfitobacterium aromaticivorans sp. nov. and Geobacter toluenoxydans sp. nov., iron-reducing bacteria capable of anaerobic degradation of monoaromatic hydrocarbons.
- BiologyInternational journal of systematic and evolutionary microbiology
- 2010
To the best of the authors' knowledge, strain UKTL(T) is the first described spore-forming, iron-reducing bacterium that can degrade aromatic hydrocarbons.
Isolation of Geobacter species from diverse sedimentary environments
- BiologyApplied and environmental microbiology
- 1996
The isolation of five new strains which could obtain energy for growth by dissimilatory Fe(III) reduction from freshwater aquatic sediments, a pristine deep aquifer, and a petroleum-contaminated shallow aquifer demonstrates that Geobacter species are widely distributed in a diversity of sedimentary environments in which Fe( III) reduction is an important process.
Geobacter lovleyi sp. nov. Strain SZ, a Novel Metal-Reducing and Tetrachloroethene-Dechlorinating Bacterium
- BiologyApplied and Environmental Microbiology
- 2006
ABSTRACT A bacterial isolate, designated strain SZ, was obtained from noncontaminated creek sediment microcosms based on its ability to derive energy from acetate oxidation coupled to…
Reductive Dehalogenation of Trichloroacetic Acid byTrichlorobacter thiogenes gen. nov., sp. nov
- Chemistry, BiologyApplied and Environmental Microbiology
- 2000
A bacterium able to grow via reductive dechlorination of trichloroacetate was isolated from anaerobic soil enrichments and the name Trichlorobacter thiogenes is suggested for strain K1, which seemed to be coupled to a novel sulfur-sulfide redox cycle.
Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov.
- Biology, EngineeringInternational journal of systematic and evolutionary microbiology
- 2000
The evolutionary distances of the isolates to members of the related genera Xanthomonas, Stenotrophomonas and Xylella calculated by the 16S rDNA sequences led to the proposal of two new genera and three new species.
Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.
- BiologyInternational journal of systematic and evolutionary microbiology
- 2007
Phylogenetic analysis of nifD, recA, gyrB, rpoB, fusA and 16S rRNA genes indicated that T. thiogenes falls within the Geobacter cluster of the family Geobacteriaaceae.