Genomic variation in 3,010 diverse accessions of Asian cultivated rice

  title={Genomic variation in 3,010 diverse accessions of Asian cultivated rice},
  author={Wensheng Wang and Ramil Mauleon and Zhiqiang Hu and Dmytro Chebotarov and Shuaishuai Tai and Zhichao Wu and Min Li and Tianqing Zheng and Roven Rommel Fuentes and Fan Zhang and Locedie Mansueto and Dario Copetti and Millicent Sanciangco and Kevin Palis and Jianlong Xu and Chen Sun and Binying Fu and Hongliang Zhang and Yongming Gao and Xiuqin Zhao and Fei Shen and Xiao Cui and Hong Yu and Zichao Li and Miaolin Chen and Jeffrey Detras and Yongli Zhou and X. Zhang and Yue Zhao and Dave Kudrna and Chunchao Wang and Rui Li and Ben Jia and Jinyuan Lu and Xianchang He and Zhaotong Dong and Jiabao Xu and Yanhong Li and Miao Wang and Jianxin Shi and Jing Li and D Zhang and Seunghee Lee and Wushu Hu and Alexander Poliakov and Inna Dubchak and Victor Jun M. Ulat and Frances Nikki Borja and John Robert Mendoza and Jauhar Ali and Qiang Gao and Yongchao Niu and Z. Yue and Ma. Elizabeth B. Naredo and Jayson Talag and Xueqiang Wang and Jinjie Li and Xiaodong Fang and Ye Yin and J. -C. Glaszmann and Jianwei Zhang and Jiayang Li and Ruaraidh Sackville Hamilton and Rod A. Wing and Jue Ruan and Gengyun Zhang and Chaochun Wei and Nickolai Alexandrov and Kenneth L. McNally and Zhikang Li and Hei Leung},
Here we analyse genetic variation, population structure and diversity among 3,010 diverse Asian cultivated rice (Oryza sativa L.) genomes from the 3,000 Rice Genomes Project. Our results are consistent with the five major groups previously recognized, but also suggest several unreported subpopulations that correlate with geographic location. We identified 29 million single nucleotide polymorphisms, 2.4 million small indels and over 90,000 structural variations that contribute to within- and… CONTINUE READING


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