Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

@inproceedings{Spindel2015GenomicSA,
  title={Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines},
  author={Jennifer Spindel and Hasina Begum and Deniz Akdemir and Parminder Virk and Bertrand Collard and Edilberto D. Redo{\~n}a and Gary N. Atlin and Jean-Luc Jannink and Susan R McCouch},
  booktitle={PLoS genetics},
  year={2015}
}
Genomic Selection (GS) is a new breeding method in which genome-wide markers are used to predict the breeding value of individuals in a breeding population. GS has been shown to improve breeding efficiency in dairy cattle and several crop plant species, and here we evaluate for the first time its efficacy for breeding inbred lines of rice. We performed a genome-wide association study (GWAS) in conjunction with five-fold GS cross-validation on a population of 363 elite breeding lines from the… CONTINUE READING
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