Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages

@inproceedings{Deng2014GenomicEO,
  title={Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages},
  author={Xiangyu Deng and Prerak T. Desai and Henk C. den Bakker and Matthew L. Mikoleit and Beth Tolar and Eija K. Trees and Rene Sj\ogren Hendriksen and Jonathan G. Frye and Steffen Porwollik and Bart C. Weimer and Martin Wiedmann and George Weinstock and Patricia I. Fields and Michael McClelland},
  booktitle={Emerging infectious diseases},
  year={2014}
}
Salmonella enterica serotype Enteritidis is one of the most commonly reported causes of human salmonellosis. Its low genetic diversity, measured by fingerprinting methods, has made subtyping a challenge. We used whole-genome sequencing to characterize 125 S. enterica Enteritidis and 3 S. enterica serotype Nitra strains. Single-nucleotide polymorphisms were filtered to identify 4,887 reliable loci that distinguished all isolates from each other. Our whole-genome single-nucleotide polymorphism… CONTINUE READING
Related Discussions
This paper has been referenced on Twitter 3 times. VIEW TWEETS

From This Paper

Topics from this paper.

Citations

Publications citing this paper.
Showing 1-10 of 20 extracted citations

Retrospective genome-wide comparisons of Salmonella enterica serovar Enteritidis from suspected outbreaks in Singapore.

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases • 2018
View 2 Excerpts

100K Pathogen Genome Project

Genome announcements • 2017

References

Publications referenced by this paper.
Showing 1-10 of 44 references

A computational genomics pipeline for prokaryotic sequencing projects

Bioinformatics • 2010
View 13 Excerpts
Highly Influenced

Similar Papers

Loading similar papers…