Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
@article{Arcila2017GenomewideIA, title={Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life}, author={D. Arcila and G. Ort{\'i} and R. Vari and J. Armbruster and M. Stiassny and K. D. Ko and M. Sabaj and J. Lundberg and L. Revell and Ricardo Betancur-R}, journal={Nature Ecology &Evolution}, year={2017}, volume={1} }
Much progress has been achieved in disentangling evolutionary relationships among species in the tree of life, but some taxonomic groups remain difficult to resolve despite increasing availability of genome-scale data sets. Here we present a practical approach to studying ancient divergences in the face of high levels of conflict, based on explicit gene genealogy interrogation (GGI). We show its efficacy in resolving the controversial relationships within the largest freshwater fish radiation… Expand
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References
SHOWING 1-10 OF 86 REFERENCES
Genome-scale approaches to resolving incongruence in molecular phylogenies
- Biology, Medicine
- Nature
- 2003
- 1,384
- PDF
Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
- Biology, Medicine
- Proceedings of the National Academy of Sciences
- 2012
- 361
- PDF
Phylogenomic interrogation of arachnida reveals systemic conflicts in phylogenetic signal.
- Biology, Medicine
- Molecular biology and evolution
- 2014
- 191
- PDF
A practical approach to phylogenomics: the phylogeny of ray-finned fish (Actinopterygii) as a case study
- Medicine, Biology
- BMC Evolutionary Biology
- 2006
- 322
- PDF
Whole-genome analyses resolve early branches in the tree of life of modern birds
- Medicine, Biology
- Science
- 2014
- 1,222
- PDF
Irrational exuberance for resolved species trees
- Biology, Medicine
- Evolution; international journal of organic evolution
- 2016
- 131
- PDF
Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals.
- Biology, Medicine
- Molecular biology and evolution
- 2013
- 145
- PDF
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
- Biology, Medicine
- PLoS biology
- 2011
- 764
- PDF
Phylogenetic analysis at deep timescales: unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum.
- Biology, Medicine
- Molecular phylogenetics and evolution
- 2014
- 210