Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134T)

Abstract

Saccharomonospora cyanea Runmao et al. 1988 is a member of the genus Saccharomonospora in the family Pseudonocardiaceae that is moderately well characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as soil, leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they probably play a role in the primary degradation of plant material by attacking hemicellulose. Species of the genus Saccharomonospora are usually Gram-positive, non-acid fast, and are classified among the actinomycetes. S. cyanea is characterized by a dark blue (= cyan blue) aerial mycelium. After S. viridis, S. azurea, and S. marina, S. cyanea is only the fourth member in the genus for which a completely sequenced (non-contiguous finished draft status) type strain genome will be published. Here we describe the features of this organism, together with the draft genome sequence, and annotation. The 5,408,301 bp long chromosome with its 5,139 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI).

DOI: 10.4056/sigs.4207886

11 Figures and Tables

Cite this paper

@inproceedings{MeierKolthoff2013GenomeSO, title={Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134T)}, author={Jan P. Meier-Kolthoff and Megan Lu and Marcel Huntemann and Susan M. Lucas and Alla Lapidus and Alex Copeland and Sam Pitluck and Lynne A. Goodwin and Cliff Han and Roxanne Tapia and Gabriele P{\"{o}tter and Miriam L. Land and Natalia N Ivanova and Manfred Rohde and Markus G{\"{o}ker and J. Chris Detter and Tanja Woyke and Nikos C Kyrpides and Hans-Peter Klenk}, booktitle={Standards in genomic sciences}, year={2013} }