Genome Sequence of Lentibacillus jeotgali GrbiT, Isolated from Traditional Korean Salt-Fermented Seafood

@article{Jung2011GenomeSO,
  title={Genome Sequence of Lentibacillus jeotgali GrbiT, Isolated from Traditional Korean Salt-Fermented Seafood},
  author={Mi-Ja Jung and S. Roh and Minsoo Kim and T. W. Whon and J. Bae},
  journal={Journal of Bacteriology},
  year={2011},
  volume={193},
  pages={6414 - 6415}
}
ABSTRACT Lentibacillus jeotgali GrbiT, isolated from a traditional Korean salt-fermented seafood, is a strictly aerobic, Gram-positive, nonmotile, endospore-forming, moderately halophilic bacterium belonging to the family Bacillaceae in the phylum Firmicutes. Here, the draft genome sequence of L. jeotgali GrbiT (3,775,822 bp with a G+C content of 42.5%) is reported. This is the first reported genome sequence from a Lentibacillus species. 
Complete genome sequence of strain Lentibacillus amyloliquefaciens LAM0015(T) isolated from saline sediment.
TLDR
The genome sequence of strain LAM0015(T) provides basic information for further elucidation of halophilic mechanism and wider exploitation of functional genes, and is the first to publish complete genome sequences of the Lentibacillus genus. Expand
Effects of Temperature on Bacterial Communities and Metabolites during Fermentation of Myeolchi-Aekjeot, a Traditional Korean Fermented Anchovy Sauce
TLDR
This study suggests that high temperatures (approximately 30°C) may be appropriate in MA fermentation, in the light of faster disappearance of potentially pathogenic genera, higher amino acids, growth of Tetragenococcus, and faster fermentation. Expand
ODFM, an omics data resource from microorganisms associated with fermented foods
TLDR
The ODFM archives genome, metagenome, metataxonome, and (meta)transcriptome sequences of fermented food-associated bacteria, archaea, eukaryotic microorganisms, and viruses; 131 bacterial, 38 archaeal, and 28 eUKaryotic genomes are now available to users. Expand
Genome sequences published outside of Standards in Genomic Sciences, October - November 2012
The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. WhileExpand
Genome sequences published outside of Standards in Genomic Sciences, October — November 2011
The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. WhileExpand

References

SHOWING 1-10 OF 14 REFERENCES
Lentibacillus jeotgali sp. nov., a halophilic bacterium isolated from traditional Korean fermented seafood.
TLDR
A novel, Gram-positive, non-motile, endospore-forming and moderately halophilic bacterium, strain Grbi(T), was isolated from a traditional Korean fermented seafood and should be classified as a novel species within the genus Lentibacillus. Expand
Salinicoccus jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.
TLDR
The combined evidence from the low DNA-DNA relatedness, physiological, biochemical and other genotypic data indicate that strain S2R53-5(T) clearly represents a novel species of the genus Salinicoccus, for which the name SalinicOCcus jeotgali sp. Expand
Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
TLDR
The results indicate that the archaeal populations in the fermented seafood analyzed are diverse and include the halophilic and mesophilic groups, and that barcoded pyrosequencing is a promising and cost-effective method for analyzing microbial diversity compared with conventional approaches. Expand
Identifying bacterial genes and endosymbiont DNA with Glimmer
TLDR
The interpolated Markov model (IMM) DNA discriminator correctly separated 99% of the sequences in a recent genome project that produced a mixture of sequences from the bacterium Prochloron didemni and its sea squirt host, Lissoclinum patella. Expand
Halophilic bacteria and their compatible solutes – osmoregulation and potential applications
Halophilic bacteria grow over an extended range of salt concentrations. Their metabolic patterns are distinct compared to their terrestrial counterparts and obligate halophiles. The possibility ofExpand
The COG database: a tool for genome-scale analysis of protein functions and evolution
TLDR
The database of Clusters of Orthologous Groups of proteins (COGs) is an attempt on a phylogenetic classification of the proteins encoded in 21 complete genomes of bacteria, archaea and eukaryotes. Expand
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
We describe a program, tRNAscan-SE, which identifies 99-100% of transfer RNA genes in DNA sequence while giving less than one false positive per 15 gigabases. Two previously described tRNA detectionExpand
A Study on the Regional Characteristics of Korean Chotkal -The kinds and materials of chotkal-
TLDR
The kinds and materials of Korean chotkals are studied by interviewing local people living in 142 different regions which are bigger than 'myon' in size by analyzed and interpreted with natural environmental factor. Expand
NCBI Reference Sequences: current status, policy and new initiatives
TLDR
The recent growth of the RefSeq database, recent changes to feature annotations and record types for eukaryotic (primarily vertebrate) species and policies regarding species inclusion and genome annotation are reported on. Expand
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
TLDR
The subsystem approach is described, the first release of the growing library of populated subsystems is offered, and the SEED is the first annotation environment that supports this model of annotation. Expand
...
1
2
...