Generative Models for Graph-Based Protein Design
@inproceedings{Ingraham2019GenerativeMF, title={Generative Models for Graph-Based Protein Design}, author={John Ingraham and Vikas K. Garg and R. Barzilay and T. Jaakkola}, booktitle={DGS@ICLR}, year={2019} }
Engineered proteins offer the potential to solve many problems in biomedicine, energy, and materials science, but creating designs that succeed is difficult in practice. [...] Key Method Our approach efficiently captures the complex dependencies in proteins by focusing on those that are long-range in sequence but local in 3D space. Our framework improves in both speed and reliability over conventional and neural network-based approaches, and takes a step toward rapid and targeted biomolecular design with the…Expand
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References
SHOWING 1-10 OF 53 REFERENCES
Unified rational protein engineering with sequence-only deep representation learning
- Computer Science, Biology
- 2019
- 33
- PDF
Design of metalloproteins and novel protein folds using variational autoencoders
- Biology, Medicine
- Scientific Reports
- 2018
- 33
- PDF
Unified rational protein engineering with sequence-based deep representation learning
- Computer Science, Medicine
- Nature Methods
- 2019
- 93
- PDF
A general-purpose protein design framework based on mining sequence-structure relationships in known protein structures
- Computer Science, Biology
- 2018
- 13
- PDF