Gene set enrichment analysis using linear models and diagnostics

@article{Oron2008GeneSE,
  title={Gene set enrichment analysis using linear models and diagnostics},
  author={Assaf P. Oron and Zhen Jiang and Robert Gentleman},
  journal={Bioinformatics},
  year={2008},
  volume={24 22},
  pages={2586-91}
}
MOTIVATION Gene-set enrichment analysis (GSEA) can be greatly enhanced by linear model (regression) diagnostic techniques. Diagnostics can be used to identify outlying or influential samples, and also to evaluate model fit and explore model expansion. RESULTS We demonstrate this methodology on an adult acute lymphoblastic leukemia (ALL) dataset, using GSEA based on chromosome-band mapping of genes. Individual residuals, grouped or aggregated by chromosomal loci, indicate problematic samples… CONTINUE READING
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