Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

@inproceedings{Goecks2010GalaxyAC,
  title={Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences},
  author={Jeremy Goecks and Anton Nekrutenko and James Taylor},
  booktitle={Genome Biology},
  year={2010}
}
Increased reliance on computational approaches in the life sciences has revealed grave concerns about how accessible and reproducible computation-reliant results truly are. Galaxy http://usegalaxy.org, an open web-based platform for genomic research, addresses these problems. Galaxy automatically tracks and manages data provenance and provides support for capturing the context and intent of computational methods. Galaxy Pages are interactive, web-based documents that provide users with a medium… CONTINUE READING
BETA

Similar Papers

Figures, Tables, and Topics from this paper.

Explore Further: Topics Discussed in This Paper

Citations

Publications citing this paper.
SHOWING 1-10 OF 2,059 CITATIONS, ESTIMATED 69% COVERAGE

Closha: bioinformatics workflow system for the analysis of massive sequencing data

  • BMC Bioinformatics
  • 2018
VIEW 6 EXCERPTS
CITES METHODS
HIGHLY INFLUENCED

Expanding Tasks of Logical Workflows Into Independent Workflows for Improved Scalability

  • 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing
  • 2014
VIEW 10 EXCERPTS
CITES BACKGROUND
HIGHLY INFLUENCED

Physiolyze: A Galaxy-based web service for Heart Rate Variability analysis with online processing

  • 2014 8th Conference of the European Study Group on Cardiovascular Oscillations (ESGCO)
  • 2014
VIEW 6 EXCERPTS
CITES METHODS
HIGHLY INFLUENCED

Similarity Search for Scientific Workflows

VIEW 9 EXCERPTS
CITES BACKGROUND & METHODS
HIGHLY INFLUENCED

The Banana Genome Hub

VIEW 11 EXCERPTS
CITES BACKGROUND
HIGHLY INFLUENCED

FILTER CITATIONS BY YEAR

2003
2019

CITATION STATISTICS

  • 225 Highly Influenced Citations

  • Averaged 132 Citations per year over the last 3 years

References

Publications referenced by this paper.
SHOWING 1-10 OF 35 REFERENCES

Mobyle: a new full web bioinformatics framework

  • Bioinformatics
  • 2009
VIEW 6 EXCERPTS
HIGHLY INFLUENTIAL

. Accessible reproducible research

M Reich, T Liefeld, +3 authors JP Mesirov
  • 2010

Open Data and the Social Contract of Scientific Publishing

TJ Vision
  • BioScience
  • 2010
VIEW 1 EXCERPT