GSAASeqSP: A Toolset for Gene Set Association Analysis of RNA-Seq Data

  title={GSAASeqSP: A Toolset for Gene Set Association Analysis of RNA-Seq Data},
  author={Qing Xiong and Sayan Mukherjee and Terrence S. Furey},
  booktitle={Scientific reports},
RNA-Seq is quickly becoming the preferred method for comprehensively characterizing whole transcriptome activity, and the analysis of count data from RNA-Seq requires new computational tools. We developed GSAASeqSP, a novel toolset for genome-wide gene set association analysis of sequence count data. This toolset offers a variety of statistical procedures via combinations of multiple gene-level and gene set-level statistics, each having their own strengths under different sample and… CONTINUE READING
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