GPU Accelerated RNA Folding Algorithm

@inproceedings{Rizk2009GPUAR,
  title={GPU Accelerated RNA Folding Algorithm},
  author={Guillaume Rizk and Dominique Lavenier},
  booktitle={ICCS},
  year={2009}
}
Many bioinformatics studies require the analysis of RNA or DNA structures. More specifically, extensive work is done to elaborate efficient algorithms able to predict the 2-D folding structures of RNA or DNA sequences. However, the high computational complexity of the algorithms, combined with the rapid increase of genomic data, triggers the need of faster methods. Current approaches focus on parallelizing these algorithms on multiprocessor systems or on clusters, yielding to good performance… CONTINUE READING
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