From writing to reading the encyclopedia of life
@article{Hebert2016FromWT, title={From writing to reading the encyclopedia of life}, author={Paul D. N. Hebert and Peter M. Hollingsworth and Mehrdad Hajibabaei}, journal={Philosophical Transactions of the Royal Society B: Biological Sciences}, year={2016}, volume={371} }
Prologue ‘As the study of natural science advances, the language of scientific description may be greatly simplified and abridged. This has already been done by Linneaus and may be carried still further by other invention. The descriptions of natural orders and genera may be reduced to short definitions, and employment of signs, somewhat in the manner of algebra, instead of long descriptions. It is more easy to conceive this, than it is to conceive with what facility, and in how short a time, a…
48 Citations
Código de barras de ADN
- Biology
- 2020
It is argued that even if it wouldn’t have any empirical impediment, the DNA barcode could not be a method of species discovery.
Genome skimming herbarium specimens for DNA barcoding and phylogenomics
- Biology, MedicinePlant Methods
- 2018
Routine plastome sequencing from herbarium specimens is feasible and cost-effective, and can be performed with limited sample destruction, showing that genome skimming can be used to generate genomic information from her barium specimens as old as 80 years and using as little as 500 pg of degraded starting DNA.
A new way to contemplate Darwin's tangled bank: how DNA barcodes are reconnecting biodiversity science and biomonitoring
- Environmental SciencePhilosophical Transactions of the Royal Society B: Biological Sciences
- 2016
Encompassing the breadth of biodiversity in biomonitoring programmes has been frustrated by an inability to simultaneously identify large numbers of species accurately and in a timely fashion.…
A molecular-based identification resource for the arthropods of Finland
- Biology
- 2021
The creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland) is reported, a probabilistic taxonomic assignment tool, FinPROTAX, is trained, and a new identification tool is delivered based on this resource.
A molecular‐based identification resource for the arthropods of Finland
- BiologyMolecular ecology resources
- 2021
A comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland) is created, a probabilistic taxonomic assignment tool, FinPROTAX is trained, and a new identification tool for insects and spiders is delivered, as based on this resource.
Generating DNA sequence data with limited resources for molecular biology: Lessons from a barcoding project in Indonesia
- BiologyApplications in plant sciences
- 2018
There is a need to build capacity to generate useful sequence data in countries with limited historical access to laboratory resources, so that researchers can benefit from the advantages offered by these data.
Unraveling the plant diversity of the Amazonian canga through DNA barcoding
- Environmental ScienceEcology and evolution
- 2021
DNA barcodes for 1,130 specimens of 538 species, 323 genera, and 115 families of vascular plants from a highly diverse flora in the Amazon basin are described, with a total of 344 species being barcoded for the first time.
Field-based species identification in eukaryotes using single molecule, real-time sequencing
- BiologybioRxiv
- 2017
It is shown that a field-based RTnS analysis of closely-related plant species (Arabidopsis spp.) has many advantages over laboratory-based high-throughput sequencing methods for species level identification-by-sequencing and de novo phylogenomics.
Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology
- BiologybioRxiv
- 2018
This work shows that rapid raw-read reference datasets, or R4IDs for short, generated in a matter of hours on the Oxford Nanopore MinION, can bridge the gap and accelerate the generation of useable reference sequence data by exploiting the long read length of this technology.
The water flea Daphnia pulex (Cladocera, Daphniidae), a possible model organism to evaluate aspects of freshwater ecosystems
- Environmental Science, Biology
- 2019
The aim of this study was to conduct a literature review of D. pulex related to its life history and genetic variability, in order to mark a route for future studies.
References
SHOWING 1-10 OF 201 REFERENCES
Towards writing the encyclopaedia of life: an introduction to DNA barcoding
- BiologyPhilosophical Transactions of the Royal Society B: Biological Sciences
- 2005
Although still controversial, the scientific benefits of DNA barcoding include enabling species identification, including any life stage or fragment, facilitating species discoveries based on cluster analyses of gene sequences and providing insight into the diversity of life.
Imagining Sisyphus happy: DNA barcoding and the unnamed majority
- BiologyPhilosophical Transactions of the Royal Society B: Biological Sciences
- 2016
Building on secure Linnaean foundations, classification of unknown (and unseen) organisms to molecular operational taxonomic units (MOTUs) and deployment of these MOTUs in biodiversity science promises a rewarding resolution to the Sisyphean task of naming all the world's species.
The perils of DNA barcoding and the need for integrative taxonomy.
- BiologySystematic biology
- 2005
In the debate that accompany this article, Will and Hebert respond to 10 questions selected by the PEET audience, the promise of DNA barcoding for taxonomy is described as a useful tool for taxonomists.
DNA barcoding and taxonomy: dark taxa and dark texts
- Environmental SciencePhilosophical Transactions of the Royal Society B: Biological Sciences
- 2016
The paper concludes with an appeal for a global ‘digital dashboard’ to assess the extent to which biodiversity data are available online, and to help link names, literature and sequences.
Botany without borders: barcoding in focus
- BiologyMolecular ecology
- 2008
Progress has been made towards identifying genes that serve many of the functions of DNA barcodes, at least in some plant taxa.
Censusing marine eukaryotic diversity in the twenty-first century
- BiologyPhilosophical Transactions of the Royal Society B: Biological Sciences
- 2016
It is argued that 18S variable regions do not provide sufficient taxonomic resolution to census marine life, and it is suggested combining broad eukaryotic surveys targeting the 18S rRNA region with more taxon-focused analyses of hypervariable regions to improve the understanding of the diversity of species, the functional units of marine ecosystems.
Advancing taxonomy and bioinventories with DNA barcodes
- BiologyPhilosophical Transactions of the Royal Society B: Biological Sciences
- 2016
The use of DNA barcoding (a short sequence of the mitochondrial COI gene) in biodiversity inventories is demonstrated, from facilitating workflows of identification of freshly collected specimens from the field, to describing the overall diversity of megadiverse taxa from museum collections, and most importantly linking the fresh specimens, the general museum collections and historic type specimens.
A DNA ‘Barcode Blitz’: Rapid Digitization and Sequencing of a Natural History Collection
- Biology, Environmental SciencePloS one
- 2013
This study reveals the speed with which DNA barcoding workflows can mobilize biodiversity data, often providing the first web-accessible information for a species, and suggests that existing collections can enable the rapid development of a comprehensive DNA barcode library for the most diverse compartment of terrestrial biodiversity – insects.
Telling plant species apart with DNA: from barcodes to genomes
- BiologyPhilosophical Transactions of the Royal Society B: Biological Sciences
- 2016
An opinion article on options for enhancing current plant barcodes, focusing on increasing discriminatory power via either gene capture of nuclear markers or genome skimming, and the strengths and limitations of plant DNA barcoding for addressing these issues.
The costs of describing the entire animal kingdom.
- Environmental ScienceTrends in ecology & evolution
- 2011