Fragment recruitment on metabolic pathways: comparative metabolic profiling of metagenomes and metatranscriptomes

@article{Desai2013FragmentRO,
  title={Fragment recruitment on metabolic pathways: comparative metabolic profiling of metagenomes and metatranscriptomes},
  author={Dhwani K. Desai and Harald Schunck and Johannes W. L{\"o}ser and Julie LaRoche},
  journal={Bioinformatics},
  year={2013},
  volume={29 6},
  pages={
          790-1
        }
}
MOTIVATION The sheer scale of the metagenomic and metatranscriptomic datasets that are now available warrants the development of automated protocols for organizing, annotating and comparing the samples in terms of their metabolic profiles. We describe a user-friendly java program FROMP (Fragment Recruitment on Metabolic Pathways) for mapping and visualizing enzyme annotations onto the Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways or custom-made pathways and comparing the… CONTINUE READING
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