Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp

@inproceedings{Dong2017FastAS,
  title={Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp},
  author={Xiaoli Dong and Manuel Kleiner and Christine E. Sharp and Erin Thorson and Carmen A. Li and D. Q. Liu and Marc Strous},
  booktitle={Front. Microbiol.},
  year={2017}
}
Microbial community profiling by barcoded 16S rRNA gene amplicon sequencing currently has many applications in microbial ecology. The low costs of the parallel sequencing of multiplexed samples, combined with the relative ease of data processing and interpretation (compared to shotgun metagenomes) have made this an entry-level approach. Here we present the MetaAmp pipeline for processing of SSU rRNA gene and other non-coding or protein-coding amplicon sequencing data by investigators that are… CONTINUE READING

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