Fast Burrows Wheeler Compression Using All-Cores

@article{Deshpande2015FastBW,
  title={Fast Burrows Wheeler Compression Using All-Cores},
  author={Aditya Deshpande and P. J. Narayanan},
  journal={2015 IEEE International Parallel and Distributed Processing Symposium Workshop},
  year={2015},
  pages={628-636}
}
In this paper, we present an all-core implementation of Burrows Wheeler Compression algorithm that exploits all computing resources on a system. Our focus is to provide significant benefit to everyday users on common end-to-end applications by exploiting the parallelism of multiple CPU cores and additional accelerators, viz. Many-core GPU, on their machines. The all-core framework is suitable for problems that process large files or buffers in blocks. We consider a system to be made up of… CONTINUE READING
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