FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation

@inproceedings{Bolleman2016FALDOAS,
  title={FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation},
  author={Jerven T. Bolleman and Christopher J Mungall and Francesco Strozzi and Joachim Baran and Michel Dumontier and Raoul J. P. Bonnal and Robert M. Buels and Robert Hoehndorf and Takatomo Fujisawa and Toshiaki Katayama and Peter J. A. Cock},
  booktitle={J. Biomedical Semantics},
  year={2016}
}
BACKGROUND Nucleotide and protein sequence feature annotations are essential to understand biology on the genomic, transcriptomic, and proteomic level. Using Semantic Web technologies to query biological annotations, there was no standard that described this potentially complex location information as subject-predicate-object triples. DESCRIPTION We have developed an ontology, the Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on… CONTINUE READING
Highly Cited
This paper has 20 citations. REVIEW CITATIONS
Recent Discussions
This paper has been referenced on Twitter 26 times over the past 90 days. VIEW TWEETS

Citations

Publications citing this paper.
Showing 1-10 of 11 extracted citations

References

Publications referenced by this paper.
Showing 1-10 of 32 references

JSON-LD 1.0 - A JSON-based Serialization for Linked Data

  • M Sporny, G Kellogg, M Lanthaler
  • Tech. rep.,
  • 2014
2 Excerpts

An ontology based query engine for querying biological sequences

  • M Devisscher, T De Meyer, W Van Criekinge, P Dawyndt
  • EMBnet.journal
  • 2013
1 Excerpt

Biological Sequence Data Model

  • A LeHors, H Solbrig, E Prud’hommeaux
  • Tech . rep . , NCBI
  • 2013

GenBank

  • G Cochrane, B Alako, +26 authors V Zalunin
  • Nucleic Acids Research
  • 2013

Similar Papers

Loading similar papers…