FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.

@article{Giresi2007FAIREI,
  title={FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.},
  author={Paul G. Giresi and Jonghwan Kim and Ryan McDaniell and Vishwanath R. Iyer and Jason D. Lieb},
  journal={Genome research},
  year={2007},
  volume={17 6},
  pages={877-85}
}
DNA segments that actively regulate transcription in vivo are typically characterized by eviction of nucleosomes from chromatin and are experimentally identified by their hypersensitivity to nucleases. Here we demonstrate a simple procedure for the isolation of nucleosome-depleted DNA from human chromatin, termed FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements). To perform FAIRE, chromatin is crosslinked with formaldehyde in vivo, sheared by sonication, and phenol-chloroform… CONTINUE READING
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