Exact stochastic simulation of coupled chemical reactions with delays.

  title={Exact stochastic simulation of coupled chemical reactions with delays.},
  author={Xiaodong Cai},
  journal={The Journal of chemical physics},
  volume={126 12},
  • Xiaodong Cai
  • Published 2007 in The Journal of chemical physics
Gillespie's exact stochastic simulation algorithm (SSA) [J. Phys. Chem. 81, 2350 (1977)] has been widely used to simulate the stochastic dynamics of chemically reacting systems. In this algorithm, it is assumed that all reactions occur instantly. While this is true in many cases, it is also possible that some chemical reactions, such as gene transcription and translation in living cells, take certain time to finish after they are initiated. Thus, the product of such reactions will emerge after… CONTINUE READING
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