Exact Computation of Coalescent Likelihood under the Infinite Sites Model

@inproceedings{Wu2009ExactCO,
  title={Exact Computation of Coalescent Likelihood under the Infinite Sites Model},
  author={Yufeng Wu},
  booktitle={ISBRA},
  year={2009}
}
Coalescent likelihood is the probability of observing the given population sequences under the coalescent model. Computation of coalescent likelihood under the infinite sites model is a classic problem in coalescent theory. Existing methods are based on either importance sampling or Markov chain Monte Carlo. In this paper, we develop a simple method that can compute the exact coalescent likelihood for many datasets of moderate size, including a real biological data whose likelihood was… CONTINUE READING

References

Publications referenced by this paper.
Showing 1-10 of 20 references

and J

  • Y. S. Song, R. Lyngso
  • Hein: Counting all possible ancestral…
  • 2006
Highly Influential
5 Excerpts

Ancestral inference in population genetics Statistical Science, v

  • R. C. Griffiths, S. Tavarè
  • 9, pages 307-319,
  • 1994
Highly Influential
4 Excerpts

and R

  • M. Bahl
  • C. Griffiths: Inference from Gene Trees in a…
  • 2000
Highly Influential
5 Excerpts

Simulatiing Probability Distributions in the Coalescent, Theor

  • R. C. Griffiths, S. Tavarè
  • Popul. Biol., v. 46, pages 131-159,
  • 1994
Highly Influential
9 Excerpts

Coalescent Theory: An Introduction

  • J. Wakeley
  • 2008
2 Excerpts

and C

  • J. Hein, M. Schieru
  • Wiuf: Gene Genealogies, Variation and Evolution…
  • 2005
3 Excerpts

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