Evolution through segmental duplications and losses: a Super-Reconciliation approach

@article{Delabre2020EvolutionTS,
  title={Evolution through segmental duplications and losses: a Super-Reconciliation approach},
  author={Matt{\'e}o Delabre and Nadia El-Mabrouk and Katharina T. Huber and Manuel Lafond and Vincent Moulton and Emmanuel Noutahi and Miguel Sautie Castellanos},
  journal={Algorithms for Molecular Biology : AMB},
  year={2020},
  volume={15}
}
The classical gene and species tree reconciliation, used to infer the history of gene gain and loss explaining the evolution of gene families, assumes an independent evolution for each family. While this assumption is reasonable for genes that are far apart in the genome, it is not appropriate for genes grouped into syntenic blocks, which are more plausibly the result of a concerted evolution. Here, we introduce the Super-Reconciliation problem which consists in inferring a history of segmental… 
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Background Citations
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Methods Citations
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5 Citations

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Predicting the Evolution of Syntenies - An Algorithmic Review
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TLDR
This work proves that FastMulRFS is statistically consistent under a generic model of GDL when adversarial GDL does not occur, and shows that it matches the accuracy of MulRF and has better accuracy than prior methods, including ASTRAL-multi.

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